Search results for "Theoretical methods"
showing 10 items of 13 documents
Eight-membered Rings with Two Heteroatoms 1,3
2008
This chapter deals with heterocine rings with two heteroatoms in a 1,3-relationship, namely 1,3-diazocine, 2H-1,3-oxazocine, 2H-1,3-thiazocine, 4H-1,3-dioxocin, and 4H-1,3-dithiocin. On the 4H-1,3-oxathiocin ring system, belonging to the diheterocine family, in the past decade, no chemistry was reported. This chapter covers the literature from 1996 to 2006 and also reports those articles published in 1995 which were not reported in CHEC-II(1996). In this edition, in addition to the uncondensed derivatives, eight-membered 1,2-heterocycles fused to five-, six-, and seven-membered carbocycles or heterocycles are covered. Bridged heterocines, which actually constitute the majority of the compou…
Eight-membered Rings with Two Heteroatoms 1,5
2008
The chapter of the third edition of Comprehensive Heterocyclic Chemistry (CHEC III) 12.24 titled ‘Eight-membered Rings with two Heteroatoms 1,5’ deals with diheterocines rings with two heteroatoms in a 1,5 relationship, namely 1,5-diazocine, 1,5-oxazocine, 1,5-thiazocine, 1,5-dioxocin, 1,5-oxathiocin, and 1,5-dithiocin. This chapter covers the literature from 1996 to 2006 and also reports those articles published in 1995 which were not reported in CHEC-II(1996). In this edition, in addition to the uncondensed derivatives, eight-membered 1,5-heterocycles fused to five-, six-, and seven-membered carbocycles or heterocycles are covered. Bridged diheterocines, which actually constitute the majo…
Comparison of some dispersion-corrected and traditional functionals as applied to peptides and conformations of cyclohexane derivatives.
2012
We compare the energetic and structural properties of fully optimized α-helical and antiparallel β-sheet polyalanines and the energetic differences between axial and equatorial conformations of three cyclohexane derivatives (methyl, fluoro, and chloro) as calculated using several functionals designed to treat dispersion (B97-D, ωB97x-D, M06, M06L, and M06-2X) with other traditional functionals not specifically parametrized to treat dispersion (B3LYP, X3LYP, and PBE1PBE) and with experimental results. Those functionals developed to treat dispersion significantly overestimate interaction enthalpies of folding for the α-helix and predict unreasonable structures that contain Ramachandran φ and …
Structural Versatility of Anion−π Interactions in Halide Salts with Pentafluorophenyl Substituted Cations
2008
A series of pentafluorophenyl substituted ammonium, iminium, amidinium, and phosphonium halides are presented which show extensive anion-pi interactions. Hereby, the well-known anion-donor-pi-acceptor as well as "eta6" anion-pi-complex type interactions are observed. The latter is supported by fixation of the anion on top of the aromatic system through hydrogen bonding. This arrangement was investigated by theoretical methods showing a highly attractive anion-pi interaction. In addition an eta2-type coordination of the anions to only two C-atoms of the electron-deficient ring system is described.
β-turn tendency in N-methylated peptides with dehydrophenylalanine residue: DFT study.
2010
The tendency to adopt β-turn conformation by model dipeptides with α,β-dehydrophenylalanine (ΔPhe) residue in the gas phase and in solution is investigated by theoretical methods. We pay special attention to a dependence of conformational properties on the side-chain configuration of dehydro residue and the influence of N-methylation on β-turn stability. An extensive computational study of the conformational preferences of Z and E isomers of dipeptides Ac-Gly-(E/Z)-ΔPhe-NHMe (1a / 1b) and Ac-Gly-(E/Z)-ΔPhe-NMe(2) (2a/2b) by B3LYP/6-311++G(d,p) and MP2/6-311++G(d,p) methods is reported. It is shown that, in agreement with experimental data, Ac-Gly-(Z)-ΔPhe-NHMe has a great tendency to adopt …
Pressure-induced structural phase transitions in materials and earth sciences
2008
Pressure is an important thermodynamic parameter since it allows an increase of matter density by reducing volume. The reduction of volume by applying high pressures leads to an overall decrease of interatomic and intermolecular distances that allows exploring in detail atomic and molecular interactions. Therefore, high-pressure research has improved our fundamental understanding of these interactions in solids, liquids and gasses. The study of the structure of matter under compression is a rapid developing field that is receiving increasing attention especially due to continuous experimental and theoretical developments. In this article, we give a brief description of the experimental and …
Grand canonical ensemble approach to electrochemical thermodynamics, kinetics, and model Hamiltonians
2021
The unique feature of electrochemistry is the ability to control reaction thermodynamics and kinetics by the application of electrode potential. Recently, theoretical methods and computational approaches within the grand canonical ensemble (GCE) have enabled to explicitly include and control the electrode potential in first principles calculations. In this review, recent advances and future promises of GCE density functional theory and rate theory are discussed. Particular focus is devoted to considering how the GCE methods either by themselves or combined with model Hamiltonians can be used to address intricate phenomena such as solvent/electrolyte effects and nuclear quantum effects to pr…
Eight-membered Rings with Two Heteroatoms 1,2
2008
This chapter deals with heterocine rings with two heteroatoms in a 1,2-relationship, namely 1,2-diazocine, 2H-1,2-oxazocine, 2H-1,2-thiazocine, 1,2-dioxocin, 1,2-oxathiocin, and 1,2-dithiocin. This chapter covers the literature from 1996 to 2006 and also reports those articles published in 1995 which were not reported in CHEC-II(1996). In this edition, in addition to the uncondensed derivatives, eight-membered 1,2-heterocycles fused to five-, six-, and seven-membered carbocycles or heterocycles are covered, although in one case a four-membered fused cycle was occasionally reported. Bridged heterocines, which actually constitute the majority of the compounds reported, are covered as well. Th…
Thermochemical analysis of the OH+C2H4→C2H4OH reaction using accurate theoretical methods
2001
Abstract The radical addition of hydroxyl radical to ethene has been investigated using ab initio methods and density functional theory. The structure and energetics of reactants, prereaction complex, transition state structure and radical product have been optimized and vibrational frequencies have been calculated at the HF, MP2, B88, and B3LYP level using 6-31G* and 6-311G** basis sets. The energetics of the reaction is characterized within the MP2, DFT, G2, CBS, and BAC approaches. The evolution of the barrier height and reaction enthalpy has been systematically investigated with respect to the methodological approach employed. The best agreement with experimental results for the barrier…
A theoretical study on the decomposition mechanism of β-propiolactone and β-butyrolactone
1998
Abstract The reaction mechanism associated with the decomposition of β-propiolactone and β-butyrolactone in the gas phase to form carbon dioxide and ethylene or propene, respectively, has been theoretically characterized by using analytical gradients at the B3LYP/6-31G**, B3LYP/6-31++G**, MP2/6-31G** and MP2/6-31++G** calculation levels, as well as by single point calculations at QCISD(T)/6-31++G**//MP2/6-31++G**. A detailed analysis of the results points out that the reaction pathway can be described as an asynchronous concerted process. The geometrical parameters and the components of the transition vector are weakly dependent on the computational method. By applying transition state theo…